bioinformatics sequence alignment and markov models

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Bioinformatics Sequence Alignment And Markov Models

Author : Kal Sharma
ISBN : 9780071593076
Genre : Technology & Engineering
File Size : 50. 71 MB
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GET FULLY UP-TO-DATE ON BIOINFORMATICS-THE TECHNOLOGY OF THE 21ST CENTURY Bioinformatics showcases the latest developments in the field along with all the foundational information you'll need. It provides in-depth coverage of a wide range of autoimmune disorders and detailed analyses of suffix trees, plus late-breaking advances regarding biochips and genomes. Featuring helpful gene-finding algorithms, Bioinformatics offers key information on sequence alignment, HMMs, HMM applications, protein secondary structure, microarray techniques, and drug discovery and development. Helpful diagrams accompany mathematical equations throughout, and exercises appear at the end of each chapter to facilitate self-evaluation. This thorough, up-to-date resource features: Worked-out problems illustrating concepts and models End-of-chapter exercises for self-evaluation Material based on student feedback Illustrations that clarify difficult math problems A list of bioinformatics-related websites Bioinformatics covers: Sequence representation and alignment Hidden Markov models Applications of HMMs Gene finding Protein secondary structure prediction Microarray techniques Drug discovery and development Internet resources and public domain databases

Hidden Markov Models For Bioinformatics

Author : T. Koski
ISBN : 1402001355
Genre : Computers
File Size : 71. 92 MB
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Hidden Markov Models for Bioinformatics

Biological Sequence Analysis

Author : Richard Durbin
ISBN : 9781139457392
Genre : Science
File Size : 33. 58 MB
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Probabilistic models are becoming increasingly important in analysing the huge amount of data being produced by large-scale DNA-sequencing efforts such as the Human Genome Project. For example, hidden Markov models are used for analysing biological sequences, linguistic-grammar-based probabilistic models for identifying RNA secondary structure, and probabilistic evolutionary models for inferring phylogenies of sequences from different organisms. This book gives a unified, up-to-date and self-contained account, with a Bayesian slant, of such methods, and more generally to probabilistic methods of sequence analysis. Written by an interdisciplinary team of authors, it aims to be accessible to molecular biologists, computer scientists, and mathematicians with no formal knowledge of the other fields, and at the same time present the state-of-the-art in this new and highly important field.


Author : Source Wikipedia
ISBN : 1230629610
Genre :
File Size : 61. 69 MB
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Please note that the content of this book primarily consists of articles available from Wikipedia or other free sources online. Pages: 294. Chapters: Proteomics, Hidden Markov model, Biostatistics, Proteome, Sequence alignment, Full genome sequencing, [email protected], Metagenomics, Mass-spectrometry software, DNA microarray, Protein structure prediction, Homology modeling, Synthetic biology, Metabolomics, DNA barcoding, Multiple sequence alignment, Haplogroup M, Systems biology, Protein-protein interaction prediction, Flux balance analysis, Models of DNA evolution, Macromolecular docking, CaBIG, Metabolic network modelling, Substitution model, ChIP-on-chip, DNA binding site, Morphometrics, Personal genomics, Computational Resource for Drug Discovery, Biochip, Complex system biology, DNA sequencing theory, Sequence motif, UniProt, Protein subcellular localization prediction, Ionomics, Biopunk, 1000 Genomes Project, Statistical potential, Sequence assembly, Gene Ontology, List of biological databases, Demographic and Health Surveys, Gene prediction, Modelling biological systems, Shamkant Navathe, UCSC Genome Browser, Bioconductor, Precision and recall, Molecular modelling, Sequence profiling tool, FASTA format, Threading, Biclustering, John Quackenbush, Biomedical text mining, FASTQ format, Substitution matrix, Stockholm format, Interactome, CASP, Sensitivity and specificity, High-throughput screening, MicroRNA and microRNA target database, Scoring functions for docking, Minimum Information Standards, Genenetwork, Stochastic context-free grammar, Multiple displacement amplification, Virtual screening, List of phylogenetics software, Protein fragment library, World Health Imaging, Telemedicine, and Informatics Alliance, List of MeSH codes, Automated species identification, Ontology engineering, Gene nomenclature, Statistical coupling analysis, Suspension array technology, Sulston score, NeuroLex, Society for Mathematical Biology, Bayesian inference in phylogeny, ..

Problems And Solutions In Biological Sequence Analysis

Author : Mark Borodovsky
ISBN : 9781139458122
Genre : Science
File Size : 78. 22 MB
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This book is the first of its kind to provide a large collection of bioinformatics problems with accompanying solutions. Notably, the problem set includes all of the problems offered in Biological Sequence Analysis (BSA), by Durbin et al., widely adopted as a required text for bioinformatics courses at leading universities worldwide. Although many of the problems included in BSA as exercises for its readers have been repeatedly used for homework and tests, no detailed solutions for the problems were available. Bioinformatics instructors had therefore frequently expressed a need for fully worked solutions and a larger set of problems for use on courses. This book provides just that: following the same structure as BSA and significantly extending the set of workable problems, it will facilitate a better understanding of the contents of the chapters in BSA and will help its readers develop problem-solving skills that are vitally important for conducting successful research in the growing field of bioinformatics. All of the material has been class-tested by the authors at Georgia Tech, where the first ever M.Sc. degree program in Bioinformatics was held.

Sequence Alignment

Author : Michael S. Rosenberg
ISBN : 0520256972
Genre : Science
File Size : 26. 19 MB
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The sequencing of the human genome involved thousands of scientists but used relatively few tools. Obtaining sequences is simpler, but aligning the sequences remains a complicated but underappreciated aspect of comparative molecular biology. This book discusses the practice of alignment, and the procedures by which alignments are established.

Understanding Bioinformatics

Author : Marketa J. Zvelebil
ISBN : 0815340249
Genre : Medical
File Size : 81. 61 MB
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Suitable for advanced undergraduates & postgraduates, this book provides a definitive guide to bioinformatics. It takes a conceptual approach & guides the reader from first principles through to an understanding of the computational techniques & the key algorithms.

Introduction To Mathematical Methods In Bioinformatics

Author : Alexander Isaev
ISBN : 3540219730
Genre : Science
File Size : 76. 62 MB
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This book looks at the mathematical foundations of the models currently in use. All existing books on bioinformatics are software-orientated and they concentrate on computer implementations of mathematical models of biology. This book is unique in the sense that it looks at the mathematical foundations of the models, which are crucial for correct interpretation of the outputs of the models.

Life System Modeling And Intelligent Computing

Author : Minrui Fei
ISBN : 9783642156144
Genre : Computers
File Size : 36. 28 MB
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The 2010 International Conference on Life System Modeling and Simulation (LSMS 2010) and the 2010 International Conference on Intelligent Computing for Sustainable Energy and Environment (ICSEE 2010) were formed to bring together researchers and practitioners in the fields of life system modeling/simulation and intelligent computing applied to worldwide sustainable energy and environmental applications. A life system is a broad concept, covering both micro and macro components ra- ing from cells, tissues and organs across to organisms and ecological niches. To c- prehend and predict the complex behavior of even a simple life system can be - tremely difficult using conventional approaches. To meet this challenge, a variety of new theories and methodologies have emerged in recent years on life system modeling and simulation. Along with improved understanding of the behavior of biological systems, novel intelligent computing paradigms and techniques have emerged to h- dle complicated real-world problems and applications. In particular, intelligent c- puting approaches have been valuable in the design and development of systems and facilities for achieving sustainable energy and a sustainable environment, the two most challenging issues currently facing humanity. The two LSMS 2010 and ICSEE 2010 conferences served as an important platform for synergizing these two research streams.

Bioinformatics Technologies

Author : Yi-Ping Phoebe Chen
ISBN : 3540208739
Genre : Computers
File Size : 42. 92 MB
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Introductio to bioinformatics. Overview of structural bioinformatics. Database warehousing in bioinformatics. Modeling for bioinformatics. Pattern matching for motifs. Visualization and fractal analysis of biological sequences. Microarray data analysis.

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