python for bioinformatics second edition

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Exam Prep For Python For Bioinformatics Second Edition

Author : David Mason
ISBN : PKEY:QA1392313
Genre : Education
File Size : 65. 43 MB
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Economics is the social science that studies the production, distribution, and consumption of goods and services. This book provides over 2,000 Exam Prep questions and answers to accompany the text Python for Bioinformatics, Second Edition Items include highly probable exam items: Probability distribution function, Nonparametric regression, Data set, negative definite, Goodness of fit, Probit, Prior probability, Face, Star, Interval estimation, Likelihood, Hypergeometric distribution, Venn diagram, and more.

Python For Bioinformatics

Author : Sebastian Bassi
ISBN : 9781351976954
Genre : Mathematics
File Size : 30. 72 MB
Format : PDF
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In today's data driven biology, programming knowledge is essential in turning ideas into testable hypothesis. Based on the author’s extensive experience, Python for Bioinformatics, Second Edition helps biologists get to grips with the basics of software development. Requiring no prior knowledge of programming-related concepts, the book focuses on the easy-to-use, yet powerful, Python computer language. This new edition is updated throughout to Python 3 and is designed not just to help scientists master the basics, but to do more in less time and in a reproducible way. New developments added in this edition include NoSQL databases, the Anaconda Python distribution, graphical libraries like Bokeh, and the use of Github for collaborative development.

Bioinformatics With Python Cookbook

Author : Tiago Antao
ISBN : 9781789349986
Genre : Computers
File Size : 70. 18 MB
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Discover modern, next-generation sequencing libraries from Python ecosystem to analyze large amounts of biological data Key Features Perform complex bioinformatics analysis using the most important Python libraries and applications Implement next-generation sequencing, metagenomics, automating analysis, population genetics, and more Explore various statistical and machine learning techniques for bioinformatics data analysis Book Description Bioinformatics is an active research field that uses a range of simple-to-advanced computations to extract valuable information from biological data. This book covers next-generation sequencing, genomics, metagenomics, population genetics, phylogenetics, and proteomics. You'll learn modern programming techniques to analyze large amounts of biological data. With the help of real-world examples, you'll convert, analyze, and visualize datasets using various Python tools and libraries. This book will help you get a better understanding of working with a Galaxy server, which is the most widely used bioinformatics web-based pipeline system. This updated edition also includes advanced next-generation sequencing filtering techniques. You'll also explore topics such as SNP discovery using statistical approaches under high-performance computing frameworks such as Dask and Spark. By the end of this book, you'll be able to use and implement modern programming techniques and frameworks to deal with the ever-increasing deluge of bioinformatics data. What you will learn Learn how to process large next-generation sequencing (NGS) datasets Work with genomic dataset using the FASTQ, BAM, and VCF formats Learn to perform sequence comparison and phylogenetic reconstruction Perform complex analysis with protemics data Use Python to interact with Galaxy servers Use High-performance computing techniques with Dask and Spark Visualize protein dataset interactions using Cytoscape Use PCA and Decision Trees, two machine learning techniques, with biological datasets Who this book is for This book is for Data data Scientistsscientists, Bioinformatics bioinformatics analysts, researchers, and Python developers who want to address intermediate-to-advanced biological and bioinformatics problems using a recipe-based approach. Working knowledge of the Python programming language is expected.

Python For Bioinformatics

Author : Jason Kinser
ISBN : 9780763751869
Genre : Computers
File Size : 35. 16 MB
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Python for Bioinformatics provides a clear introduction to the Python programming language and instructs beginners on the development of simple programming exercises. Important Notice: The digital edition of this book is missing some of the images or content found in the physical edition.

Building Bioinformatics Solutions 2nd Edition

Author : Conrad Bessant
ISBN : 9780199658558
Genre : Computers
File Size : 53. 57 MB
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This book introduces the reader to all the key concepts and technologies needed to begin developing their own bioinformatics tools. The new edition includes more bioinformatics-specific content and a new chapter on good software engineering practices to help people working in teams.

Python Programming In Context

Author : Bradley N. Miller
ISBN : 9781449691974
Genre : Computers
File Size : 34. 49 MB
Format : PDF, ePub
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The user-friendly, object-oriented programming language Python is quickly becoming the most popular introductory programming language for both students and instructors. This updated Second Edition of Python Programming in Context provides a comprehensive, accessible introduction to Python fundamentals. An ideal first language for learners entering the rapidly expanding field of computer science, Python gives students a solid platform of key problem-solving skills that translate easily across programming languages. Building on essential concepts of computer science, and offering a plenitude of real-world examples, Python Programming in Context, Second Edition offers a thorough overview of multiple applied areas, including image processing, cryptography, astronomy, the Internet, and bioinformatics. The text’s emphasis on problem-solving, extrapolation, and development of independent exploration and solution-building provides students with a unique and innovative approach to learning programming. Python Programming in Context, Second Edition is the ideal introductory text for those delving into computer programming. Key Features - Utilizes Python 3 - Provides a clear, accessible, and skill-focused approach to programming with Python - Contains problem sets based on real-world examples and problem-solving rather than language features - Offers a variety of exercises that develop independent skill-building and exploration - Every new copy of the text is packaged with full student access to Turing's Craft Custom CodeLab. Customized to match the organization of the text, CodeLab offers students hands-on Python programming experience with immediate feedback. - Accompanied by a full suite of instructor support material, including solutions to the exercises in the text, downloadable source code, PowerPoint Lecture Outlines, and a complete Test Bank.

Python Data Analysis

Author : Armando Fandango
ISBN : 9781787127920
Genre : Computers
File Size : 52. 28 MB
Format : PDF, Kindle
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Learn how to apply powerful data analysis techniques with popular open source Python modules About This Book Find, manipulate, and analyze your data using the Python 3.5 libraries Perform advanced, high-performance linear algebra and mathematical calculations with clean and efficient Python code An easy-to-follow guide with realistic examples that are frequently used in real-world data analysis projects. Who This Book Is For This book is for programmers, scientists, and engineers who have the knowledge of Python and know the basics of data science. It is for those who wish to learn different data analysis methods using Python 3.5 and its libraries. This book contains all the basic ingredients you need to become an expert data analyst. What You Will Learn Install open source Python modules such NumPy, SciPy, Pandas, stasmodels, scikit-learn,theano, keras, and tensorflow on various platforms Prepare and clean your data, and use it for exploratory analysis Manipulate your data with Pandas Retrieve and store your data from RDBMS, NoSQL, and distributed filesystems such as HDFS and HDF5 Visualize your data with open source libraries such as matplotlib, bokeh, and plotly Learn about various machine learning methods such as supervised, unsupervised, probabilistic, and Bayesian Understand signal processing and time series data analysis Get to grips with graph processing and social network analysis In Detail Data analysis techniques generate useful insights from small and large volumes of data. Python, with its strong set of libraries, has become a popular platform to conduct various data analysis and predictive modeling tasks. With this book, you will learn how to process and manipulate data with Python for complex analysis and modeling. We learn data manipulations such as aggregating, concatenating, appending, cleaning, and handling missing values, with NumPy and Pandas. The book covers how to store and retrieve data from various data sources such as SQL and NoSQL, CSV fies, and HDF5. We learn how to visualize data using visualization libraries, along with advanced topics such as signal processing, time series, textual data analysis, machine learning, and social media analysis. The book covers a plethora of Python modules, such as matplotlib, statsmodels, scikit-learn, and NLTK. It also covers using Python with external environments such as R, Fortran, C/C++, and Boost libraries. Style and approach The book takes a very comprehensive approach to enhance your understanding of data analysis. Sufficient real-world examples and use cases are included in the book to help you grasp the concepts quickly and apply them easily in your day-to-day work. Packed with clear, easy to follow examples, this book will turn you into an ace data analyst in no time.

Python Machine Learning Cookbook

Author : Giuseppe Ciaburro
ISBN : 9781789800753
Genre : Computers
File Size : 79. 51 MB
Format : PDF
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Discover powerful ways to effectively solve real-world machine learning problems using key libraries including scikit-learn, TensorFlow, and PyTorch Key Features Learn and implement machine learning algorithms in a variety of real-life scenarios Cover a range of tasks catering to supervised, unsupervised and reinforcement learning techniques Find easy-to-follow code solutions for tackling common and not-so-common challenges Book Description This eagerly anticipated second edition of the popular Python Machine Learning Cookbook will enable you to adopt a fresh approach to dealing with real-world machine learning and deep learning tasks. With the help of over 100 recipes, you will learn to build powerful machine learning applications using modern libraries from the Python ecosystem. The book will also guide you on how to implement various machine learning algorithms for classification, clustering, and recommendation engines, using a recipe-based approach. With emphasis on practical solutions, dedicated sections in the book will help you to apply supervised and unsupervised learning techniques to real-world problems. Toward the concluding chapters, you will get to grips with recipes that teach you advanced techniques including reinforcement learning, deep neural networks, and automated machine learning. By the end of this book, you will be equipped with the skills you need to apply machine learning techniques and leverage the full capabilities of the Python ecosystem through real-world examples. What you will learn Use predictive modeling and apply it to real-world problems Explore data visualization techniques to interact with your data Learn how to build a recommendation engine Understand how to interact with text data and build models to analyze it Work with speech data and recognize spoken words using Hidden Markov Models Get well versed with reinforcement learning, automated ML, and transfer learning Work with image data and build systems for image recognition and biometric face recognition Use deep neural networks to build an optical character recognition system Who this book is for This book is for data scientists, machine learning developers, deep learning enthusiasts and Python programmers who want to solve real-world challenges using machine-learning techniques and algorithms. If you are facing challenges at work and want ready-to-use code solutions to cover key tasks in machine learning and the deep learning domain, then this book is what you need. Familiarity with Python programming and machine learning concepts will be useful.

Proceedings Of The 8th Python In Science Conference

Author : GaeÌl Varoquaux
ISBN : 9780557232123
Genre :
File Size : 87. 24 MB
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The proceedings of the 8th annual Python for Scientific Computing conference.

Python Parallel Programming Cookbook

Author : Giancarlo Zaccone
ISBN : 9781789530063
Genre : Computers
File Size : 55. 58 MB
Format : PDF, Docs
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Implement effective programming techniques in Python to build scalable software that saves time and memory Key Features Design distributed computing systems and massive computational tasks coherently Learn practical recipes with concise explanations that address development pain points encountered while coding parallel programs Understand how to host your parallelized applications on the cloud Book Description Nowadays, it has become extremely important for programmers to understand the link between the software and the parallel nature of their hardware so that their programs run efficiently on computer architectures. Applications based on parallel programming are fast, robust, and easily scalable. This updated edition features cutting-edge techniques for building effective concurrent applications in Python 3.7. The book introduces parallel programming architectures and covers the fundamental recipes for thread-based and process-based parallelism. You'll learn about mutex, semaphores, locks, queues exploiting the threading, and multiprocessing modules, all of which are basic tools to build parallel applications. Recipes on MPI programming will help you to synchronize processes using the fundamental message passing techniques with mpi4py. Furthermore, you'll get to grips with asynchronous programming and how to use the power of the GPU with PyCUDA and PyOpenCL frameworks. Finally, you'll explore how to design distributed computing systems with Celery and architect Python apps on the cloud using PythonAnywhere, Docker, and serverless applications. By the end of this book, you will be confident in building concurrent and high-performing applications in Python. What you will learn Synchronize multiple threads and processes to manage parallel tasks Use message passing techniques to establish communication between processes to build parallel applications Program your own GPU cards to address complex problems Manage computing entities to execute distributed computational task Write efficient programs by adopting the event-driven programming model Explore cloud technology with Django and Google App Engine Apply parallel programming techniques that can lead to performance improvements Who this book is for The Python Parallel Programming Cookbook is for software developers who are well-versed with Python and want to use parallel programming techniques to write powerful and efficient code. This book will help you master the basics and the advanced of parallel computing.

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